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Polypharmacology

Definition
Definition
Definition

Polypharmacology is the concept of designing or identifying drugs that interact with multiple biological targets rather than a single specific target. This approach recognizes the complexity of biological systems and leverages multi-target interactions to achieve enhanced efficacy, reduce resistance, or modulate complex disease pathways, especially in multifactorial diseases such as cancer, CNS disorders, and infectious diseases. In polypharmacology, it’s wise to consider the similarity of binding sites e.g. if a binding site benefits from an ionic interaction, a second target that does not benefit from such an interaction might hamper the design of ligands that engage both sites. Another consideration might be pocket size. Instead of targeting multiple sites with a single drug, polypharmacy (targeting multiple site with multiple drugs) offers an alternative strategy. However, this requires multiple optimization campaigns including for dosing, pharmacokinetics and toxicity.

Importance in Computational Drug Discovery:

  • Enables the rational design of drugs with improved efficacy by modulating multiple targets within a disease network. In turn, lower doses per target might be required to achieve therapeutic efficacy, reducing off-target toxicity.
  • Reduces the likelihood of drug resistance by simultaneously inhibiting redundant or compensatory pathways.
  • Supports drug repurposing by identifying off-target effects that may be therapeutically beneficial.
  • Facilitates the prediction and mitigation of adverse effects arising from unintended polypharmacological interactions.
  • Drives the development of network pharmacology and systems biology approaches for holistic drug discovery.

Key Tools

  • ChEMBL: Provides multi-target bioactivity data for polypharmacology analysis.
  • SwissTargetPrediction: Predicts potential off-targets and polypharmacological profiles for small molecules.
  • SEA (Similarity Ensemble Approach): Identifies likely target interactions based on chemical similarity.
  • Cytoscape: Visualizes and analyzes drug-target networks for polypharmacology studies.

Literature

"Polypharmacology: Challenges and Opportunities in Drug Discovery"

  • Publication Date: 2014
  • DOI: 10.1021/jm5006463
  • Summary: This comprehensive review discusses the concept of polypharmacology, highlighting the challenges and opportunities it presents in drug discovery. It emphasizes the need for designing drugs that can interact with multiple targets to address complex diseases effectively.

"Polypharmacology by Design: A Medicinal Chemist's Perspective on Multitargeting Compounds"

  • Publication Date: 2018
  • DOI: 10.1021/acs.jmedchem.8b00760
  • Summary: This article provides insights into the rational design of multitargeting compounds from a medicinal chemist's perspective. It discusses strategies for developing drugs with polypharmacological profiles to achieve improved therapeutic outcomes.

"Polypharmacology in Drug Discovery: A Review from Systems Pharmacology Perspective"

  • Publication Date: 2016
  • DOI: 10.2174/1381612822666160224142812
  • Summary: This review focuses on the pharmacological properties of polypharmacology, discussing potential novel drug indications arising from drug repurposing. It introduces approaches to the rational design of multi-target drugs and highlights the role of network analysis in drug repositioning.

"Polypharmacology: The Science of Multi-Targeting Molecules"

  • Publication Date: 2021
  • DOI: 10.1016/j.drudis.2021.09.012
  • Summary: This article explores the concept of polypharmacology, emphasizing the advantages of designing molecules that can interact with multiple targets simultaneously. It discusses how this approach can lead to improved efficacy and reduced side effects in drug therapy.

"De Novo Generation of Multi-Target Compounds Using Deep Generative Chemistry"

  • Publication Date: 2024
  • DOI: 10.1038/s41467-024-47120-y
  • Summary: This study presents a novel approach to designing polypharmacological compounds using deep generative chemistry. It demonstrates the potential of machine learning techniques in generating multi-target compounds with desired pharmacological profiles.