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Lipophilicity

Definition
Definition
Definition

Lipophilicity refers to the chemical property of a molecule that describes its ability to dissolve in fats, oils, lipids, and non-polar solvents versus its ability to dissolve in water (a polar solvent). It is typically quantified by the partition coefficient (log P) or distribution coefficient (log D) between octanol and water. Log P measures the ratio of concentrations of a compound in a mixture of two immiscible solvents (octanol and water), while log D accounts for the ionization state of the compound at a given pH.

Importance in Computational Drug Discovery

  1. Drug Absorption and Distribution: Lipophilicity affects the ability of a drug to cross cell membranes, which is crucial for oral absorption, distribution, and penetration into the central nervous system (CNS).
  2. Binding Affinity: Lipophilic drugs often have higher binding affinities for their targets due to better interaction with hydrophobic pockets in proteins.
  3. Metabolism and Excretion: Highly lipophilic compounds are generally metabolized more slowly and may be more prone to bioaccumulation, affecting their safety and efficacy profiles.
  4. Solubility: Balancing lipophilicity is essential for maintaining adequate solubility, which affects drug formulation and bioavailability.
  5. Toxicity: Excessive lipophilicity can lead to non-specific binding to proteins and other macromolecules, increasing the potential for off-target effects and toxicity.
  6. Protein binding: Non-specific binding to plasma and brain proteins can lead to lower bioavailability.

Key Tools

1. ADMET Predictor: A software tool that predicts ADMET properties, including lipophilicity (log P and log D), using machine learning models.

2. Schrödinger's QikProp: Provides predictions of key ADMET properties, including log P and log D, to assess the drug-likeness of compounds.

3. ChemAxon's Marvin: Includes tools for calculating lipophilicity and other physicochemical properties, aiding in the design and optimization of drug candidates.

4. ACD/Labs Percepta: A comprehensive platform for predicting physicochemical properties, including lipophilicity, using various computational models.

5. RDKit: An open-source cheminformatics software that provides functionalities for calculating lipophilicity and other molecular properties.

6. Deep Origin Tools:Balto supports lipophilicity assessment in drug discovery by providing rapid, accurate predictions of logP and logD values for candidate molecules to guide optimization of pharmacokinetic properties.

Literature

"The influence of lipophilicity in drug discovery and design"

  • Publication Date: 2012-09-25
  • DOI: 10.1517/17460441.2012.714363
  • Summary: This review discusses the critical role of lipophilicity in drug discovery and design, emphasizing its impact on ADMET properties and the overall quality of drug candidates.

"Is there enough focus on lipophilicity in drug discovery?"

  • Publication Date: 2019-11-17
  • DOI: 10.1080/17460441.2020.1691995
  • Summary: The paper highlights the importance of monitoring lipophilicity in drug discovery, suggesting that a greater focus on this property can improve the quality of candidate drugs and reduce attrition rates.

"Lipophilicity in drug discovery"

  • Publication Date: 2010-02-26
  • DOI: 10.1517/17460441003605098
  • Summary: Provides an overview of the relevant literature on lipophilicity, summarizing the optimal range of lipophilicity and highlighting the issues and risks associated with operating outside this range.

"Lipophilicity in drug design: an overview of lipophilicity descriptors in 3D-QSAR studies"

  • Publication Date: 2019-02-25
  • DOI: 10.4155/fmc-2018-0435
  • Summary: Discusses the role of lipophilicity descriptors in 3D-QSAR modeling, highlighting how these descriptors contribute to understanding structure-activity relationships in drug design.

"Lipophilicity and biomimetic properties to support drug discovery"

  • Publication Date: 2017-06-28
  • DOI: 10.1080/17460441.2017.1344210
  • Summary: Reviews the importance of lipophilicity and biomimetic properties in early drug discovery, discussing their distinct and overlapping roles in supporting the drug discovery process.